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Posted 11 days ago

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Senior Data Scientist in Image Analysis

Uppsala, SEOn-site

AI Summary

We are looking for a Senior Data Scientist in image analysis to join Navinci and build scalable, automated pipelines for spatial interactomics. You will take strong ownership in designing and advancing computational methods, with a focus on creating robust, reproducible workflows that incorporate rigorous quality control and leverage deep learning to address complex biological questions.

About this role

We are looking for a Senior Data Scientist in image analysis to join Navinci and build scalable, automated pipelines for spatial interactomics. You will take strong ownership in designing and advancing computational methods, with a focus on creating robust, reproducible workflows that incorporate rigorous quality control and leverage deep learning to address complex biological questions. The work will support both internal R&D and external collaborations.

You will be part of a highly skilled, and growing team, playing a key role in advancing pipeline development and computational innovation. The role requires both independent problem-solving and effective collaboration in a dynamic environment, helping position Navinci at the forefront of spatial biology and emerging AI technologies.

Key Responsibilities

  • Design, develop, deploy and maintain scalable, automated analysis pipelines and reproducible workflows with robust quality control for spatial interactomics data.

  • Develop novel computational methods and apply deep learning to address complex biological questions and enable new analysis capabilities.

  • Build internal tools and contribute to best practices in pipeline design, reproducibility, and code quality.

  • Collaborate with multidisciplinary teams and external partners to translate biological problems into computational solutions.

  • Mentor and guide junior team members while contributing to a collaborative, adaptive, and high-performing team environment.

  • Work effectively in a dynamic environment with adaptability, independence, and strong collaboration, while staying current with advances in spatial omics and AI (e.g., agentic/LLM-based workflows).

Qualifications

Required:

  • PhD in Computational Biology, Bioinformatics, Computer Vision, or a related field (or equivalent industry experience).

  • Strong understanding of spatial omics data and associated analysis challenges.

  • Demonstrated ability to design and develop robust, reproducible computational methods and pipelines, including components such as image processing, clustering, spatial analysis, statistical analysis and data visualization.

  • Strong proficiency in Python, with experience developing production-quality code for data analysis and pipeline development.

  • Proven, hands-on experience in developing and applying deep learning models, using machine learning frameworks (e.g., PyTorch, Scikit-learn).

  • Ability to independently solve complex, open-ended problems.

  • Strong communication and collaboration skills in interdisciplinary environments.

Preferred:

  • Industry experience in image analysis method and/or pipeline development is a strong plus.

  • Experience with agentic workflows, AI agents, or LLM-based systems.

  • Experience applying best practices in scientific programming and/or software engineering (e.g., testing, debugging, version control, CI/CD).

  • Experience with GPU programming and performance optimization.

  • Experience with high-throughput computing such as HPC or cloud computing.

  • Experience with tool development, UI/UX, or containerization (e.g., Docker).

What We Offer

  • Opportunity to shape scientific direction in a cutting-edge company.

  • Agile teams with fast decision-making and direct impact.

  • Dynamic environment with growth and leadership potential.

  • Close collaboration across R&D, product, and commercial teams.

Applications will be reviewed on a rolling basis.

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